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1.
Biochemistry ; 56(43): 5798-5811, 2017 10 31.
Artigo em Inglês | MEDLINE | ID: mdl-28967743

RESUMO

The sesquiterpene cyclase epi-isozizaene synthase (EIZS) catalyzes the cyclization of farnesyl diphosphate to form the tricyclic hydrocarbon precursor of the antibiotic albaflavenone. The hydrophobic active site pocket of EIZS serves as a template as it binds and chaperones the flexible substrate and carbocation intermediates through the conformations required for a multistep reaction sequence. We previously demonstrated that the substitution of hydrophobic residues with other hydrophobic residues remolds the template and expands product chemodiversity [Li, R., Chou, W. K. W., Himmelberger, J. A., Litwin, K. M., Harris, G. G., Cane, D. E., and Christianson, D. W. (2014) Biochemistry 53, 1155-1168]. Here, we show that the substitution of hydrophobic residues-specifically, Y69, F95, F96, and W203-with polar side chains also yields functional enzyme catalysts that expand product chemodiversity. Fourteen new EIZS mutants are reported that generate product arrays in which eight new sesquiterpene products have been identified. Of note, some mutants generate acyclic and cyclic hydroxylated products, suggesting that the introduction of polarity in the hydrophobic pocket facilitates the binding of water capable of quenching carbocation intermediates. Furthermore, the substitution of polar residues for F96 yields high-fidelity sesquisabinene synthases. Crystal structures of selected mutants reveal that residues defining the three-dimensional contour of the hydrophobic pocket can be substituted without triggering significant structural changes elsewhere in the active site. Thus, more radical nonpolar-polar amino acid substitutions should be considered when terpenoid cyclase active sites are remolded by mutagenesis with the goal of exploring and expanding product chemodiversity.


Assuntos
Substituição de Aminoácidos , Proteínas de Bactérias/química , Carbono-Carbono Liases/química , Modelos Moleculares , Streptomyces coelicolor/enzimologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Carbono-Carbono Liases/genética , Carbono-Carbono Liases/metabolismo , Domínio Catalítico , Cristalografia por Raios X , Interações Hidrofóbicas e Hidrofílicas , Mutação de Sentido Incorreto , Sesquiterpenos/química , Sesquiterpenos/metabolismo , Streptomyces coelicolor/genética
2.
Biochemistry ; 56(14): 2010-2023, 2017 04 11.
Artigo em Inglês | MEDLINE | ID: mdl-28362483

RESUMO

Terpenoid synthases catalyze isoprenoid cyclization reactions underlying the generation of more than 80,000 natural products. Such dramatic chemodiversity belies the fact that these enzymes generally consist of only three domain folds designated as α, ß, and γ. Catalysis by class I terpenoid synthases occurs exclusively in the α domain, which is found with α, αα, αß, and αßγ domain architectures. Here, we explore the influence of domain architecture on catalysis by taxadiene synthase from Taxus brevifolia (TbTS, αßγ), fusicoccadiene synthase from Phomopsis amygdali (PaFS, (αα)6), and ophiobolin F synthase from Aspergillus clavatus (AcOS, αα). We show that the cyclization fidelity and catalytic efficiency of the α domain of TbTS are severely compromised by deletion of the ßγ domains; however, retention of the ß domain preserves significant cyclization fidelity. In PaFS, we previously demonstrated that one α domain similarly influences catalysis by the other α domain [ Chen , M. , Chou , W. K. W. , Toyomasu , T. , Cane , D. E. , and Christianson , D. W. ( 2016 ) ACS Chem. Biol. 11 , 889 - 899 ]. Here, we show that the hexameric quaternary structure of PaFS enables cluster channeling. We also show that the α domains of PaFS and AcOS can be swapped so as to make functional chimeric αα synthases. Notably, both cyclization fidelity and catalytic efficiency are altered in all chimeric synthases. Twelve newly formed and uncharacterized C20 diterpene products and three C25 sesterterpene products are generated by these chimeras. Thus, engineered αßγ and αα terpenoid cyclases promise to generate chemodiversity in the greater family of terpenoid natural products.


Assuntos
Alquil e Aril Transferases/química , Aspergillus/genética , Isomerases/química , Proteínas Mutantes Quiméricas/química , Saccharomycetales/genética , Taxus/genética , Alquil e Aril Transferases/genética , Alquil e Aril Transferases/metabolismo , Aspergillus/enzimologia , Ciclização , Diterpenos/metabolismo , Expressão Gênica , Isomerases/genética , Isomerases/metabolismo , Cinética , Modelos Moleculares , Proteínas Mutantes Quiméricas/genética , Proteínas Mutantes Quiméricas/metabolismo , Domínios Proteicos , Engenharia de Proteínas , Estrutura Secundária de Proteína , Saccharomycetales/enzimologia , Sesterterpenos/biossíntese , Taxus/enzimologia
3.
Biochemistry ; 55(48): 6599-6604, 2016 Dec 06.
Artigo em Inglês | MEDLINE | ID: mdl-27933789

RESUMO

The T296V mutant of amorpha-4,11-diene synthase catalyzes the abortive conversion of the natural substrate (E,E)-farnesyl diphosphate mainly into the acyclic product (E)-ß-farnesene (88%) instead of the natural bicyclic sesquiterpene amorphadiene (7%). Incubation of the T296V mutant with (3R,6E)-nerolidyl diphosphate resulted in cyclization to amorphadiene. Analysis of additional mutants of amino acid residue 296 and in vitro assays with the intermediate analogue (2Z,6E)-farnesyl diphosphate as well as (3S,6E)-nerolidyl diphosphate demonstrated that the T296V mutant can no longer catalyze the allylic rearrangement of farnesyl diphosphate to the normal intermediate (3R,6E)-nerolidyl diphosphate, while retaining the ability to cyclize (3R,6E)-nerolidyl diphosphate to amorphadiene. The T296A mutant predominantly retained amorphadiene synthase activity, indicating that neither the hydroxyl nor the methyl group of the Thr296 side chain is required for cyclase activity.


Assuntos
Alquil e Aril Transferases/química , Difosfatos/química , Mutação de Sentido Incorreto , Proteínas de Plantas/química , Fosfatos de Poli-Isoprenil/química , Sesquiterpenos/química , Alquil e Aril Transferases/genética , Alquil e Aril Transferases/metabolismo , Artemisia annua/enzimologia , Artemisia annua/genética , Artemisia annua/metabolismo , Biocatálise , Ciclização , Difosfatos/metabolismo , Cromatografia Gasosa-Espectrometria de Massas , Cinética , Modelos Químicos , Estrutura Molecular , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Sesquiterpenos Policíclicos , Fosfatos de Poli-Isoprenil/metabolismo , Sesquiterpenos/metabolismo , Estereoisomerismo , Especificidade por Substrato
4.
Biochemistry ; 55(20): 2864-74, 2016 05 24.
Artigo em Inglês | MEDLINE | ID: mdl-27172425

RESUMO

Aristolochene synthase (ATAS) is a high-fidelity terpenoid cyclase that converts farnesyl diphosphate exclusively into the bicyclic hydrocarbon aristolochene. Previously determined crystal structures of ATAS complexes revealed trapped active site water molecules that could potentially interact with catalytic intermediates: water "w" hydrogen bonds with S303 and N299, water molecules "w1" and "w2" hydrogen bond with Q151, and a fourth water molecule coordinates to the Mg(2+)C ion. There is no obvious role for water in the ATAS mechanism because the enzyme exclusively generates a hydrocarbon product. Thus, these water molecules are tightly controlled so that they cannot react with carbocation intermediates. Steady-state kinetics and product distribution analyses of eight ATAS mutants designed to perturb interactions with active site water molecules (S303A, S303H, S303D, N299A, N299L, N299A/S303A, Q151H, and Q151E) indicate relatively modest effects on catalysis but significant effects on sesquiterpene product distributions. X-ray crystal structures of S303A, N299A, N299A/S303A, and Q151H mutants reveal minimal perturbation of active site solvent structure. Seven of the eight mutants generate farnesol and nerolidol, possibly resulting from addition of the Mg(2+)C-bound water molecule to the initially formed farnesyl cation, but no products are generated that would suggest enhanced reactivity of other active site water molecules. However, intermediate germacrene A tends to accumulate in these mutants. Thus, apart from the possible reactivity of Mg(2+)C-bound water, active site water molecules in ATAS are not directly involved in the chemistry of catalysis but instead contribute to the template that governs the conformation of the flexible substrate and carbocation intermediates.


Assuntos
Aspergillus/enzimologia , Proteínas Fúngicas/química , Isomerases/química , Sesquiterpenos/química , Água/química , Substituição de Aminoácidos , Aspergillus/genética , Domínio Catalítico , Cristalografia por Raios X , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Isomerases/genética , Isomerases/metabolismo , Mutação de Sentido Incorreto , Sesquiterpenos/metabolismo , Água/metabolismo
5.
ACS Chem Biol ; 11(4): 889-99, 2016 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-26734760

RESUMO

Fusicoccin A is a diterpene glucoside phytotoxin generated by the fungal pathogen Phomopsis amygdali that causes the plant disease constriction canker, first discovered in New Jersey peach orchards in the 1930s. Fusicoccin A is also an emerging new lead in cancer chemotherapy. The hydrocarbon precursor of fusicoccin A is the tricyclic diterpene fusicoccadiene, which is generated by a bifunctional terpenoid synthase. Here, we report X-ray crystal structures of the individual catalytic domains of fusicoccadiene synthase: the C-terminal domain is a chain elongation enzyme that generates geranylgeranyl diphosphate, and the N-terminal domain catalyzes the cyclization of geranylgeranyl diphosphate to form fusicoccadiene. Crystal structures of each domain complexed with bisphosphonate substrate analogues suggest that three metal ions and three positively charged amino acid side chains trigger substrate ionization in each active site. While in vitro incubations reveal that the cyclase domain can utilize farnesyl diphosphate and geranyl diphosphate as surrogate substrates, these shorter isoprenoid diphosphates are mainly converted into acyclic alcohol or hydrocarbon products. Gel filtration chromatography and analytical ultracentrifugation experiments indicate that full-length fusicoccadiene synthase adopts hexameric quaternary structure, and small-angle X-ray scattering data yield a well-defined molecular envelope illustrating a plausible model for hexamer assembly.


Assuntos
Diterpenos/metabolismo , Ligases/metabolismo , Catálise , Cristalografia por Raios X , Ligases/química , Relação Estrutura-Atividade
6.
Biochemistry ; 54(48): 7142-55, 2015 Dec 08.
Artigo em Inglês | MEDLINE | ID: mdl-26598179

RESUMO

Geosmin synthase from Streptomyces coelicolor (ScGS) catalyzes an unusual, metal-dependent terpenoid cyclization and fragmentation reaction sequence. Two distinct active sites are required for catalysis: the N-terminal domain catalyzes the ionization and cyclization of farnesyl diphosphate to form germacradienol and inorganic pyrophosphate (PPi), and the C-terminal domain catalyzes the protonation, cyclization, and fragmentation of germacradienol to form geosmin and acetone through a retro-Prins reaction. A unique αα domain architecture is predicted for ScGS based on amino acid sequence: each domain contains the metal-binding motifs typical of a class I terpenoid cyclase, and each domain requires Mg(2+) for catalysis. Here, we report the X-ray crystal structure of the unliganded N-terminal domain of ScGS and the structure of its complex with three Mg(2+) ions and alendronate. These structures highlight conformational changes required for active site closure and catalysis. Although neither full-length ScGS nor constructs of the C-terminal domain could be crystallized, homology models of the C-terminal domain were constructed on the basis of ∼36% sequence identity with the N-terminal domain. Small-angle X-ray scattering experiments yield low-resolution molecular envelopes into which the N-terminal domain crystal structure and the C-terminal domain homology model were fit, suggesting possible αα domain architectures as frameworks for bifunctional catalysis.


Assuntos
Alendronato/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Naftóis/metabolismo , Sesquiterpenos/metabolismo , Streptomyces coelicolor/enzimologia , Cristalografia por Raios X , Ciclização , Magnésio/metabolismo , Modelos Moleculares , Fosfatos de Poli-Isoprenil/metabolismo , Estrutura Terciária de Proteína , Streptomyces coelicolor/química , Streptomyces coelicolor/metabolismo
7.
Biochemistry ; 53(7): 1155-68, 2014 Feb 25.
Artigo em Inglês | MEDLINE | ID: mdl-24517311

RESUMO

The class I terpenoid cyclase epi-isozizaene synthase (EIZS) utilizes the universal achiral isoprenoid substrate, farnesyl diphosphate, to generate epi-isozizaene as the predominant sesquiterpene cyclization product and at least five minor sesquiterpene products, making EIZS an ideal platform for the exploration of fidelity and promiscuity in a terpenoid cyclization reaction. The hydrophobic active site contour of EIZS serves as a template that enforces a single substrate conformation, and chaperones subsequently formed carbocation intermediates through a well-defined mechanistic sequence. Here, we have used the crystal structure of EIZS as a guide to systematically remold the hydrophobic active site contour in a library of 26 site-specific mutants. Remolded cyclization templates reprogram the reaction cascade not only by reproportioning products generated by the wild-type enzyme but also by generating completely new products of diverse structure. Specifically, we have tripled the overall number of characterized products generated by EIZS. Moreover, we have converted EIZS into six different sesquiterpene synthases: F96A EIZS is an (E)-ß-farnesene synthase, F96W EIZS is a zizaene synthase, F95H EIZS is a ß-curcumene synthase, F95M EIZS is a ß-acoradiene synthase, F198L EIZS is a ß-cedrene synthase, and F96V EIZS and W203F EIZS are (Z)-γ-bisabolene synthases. Active site aromatic residues appear to be hot spots for reprogramming the cyclization cascade by manipulating the stability and conformation of critical carbocation intermediates. A majority of mutant enzymes exhibit only relatively modest 2-100-fold losses of catalytic activity, suggesting that residues responsible for triggering substrate ionization readily tolerate mutations deeper in the active site cavity.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Streptomyces coelicolor/enzimologia , Terpenos/química , Terpenos/metabolismo , Domínio Catalítico , Cristalografia por Raios X , Ciclização , Cinética , Modelos Moleculares , Estrutura Molecular , Mutagênese Sítio-Dirigida
8.
Biochemistry ; 52(31): 5247-55, 2013 Aug 06.
Artigo em Inglês | MEDLINE | ID: mdl-23844678

RESUMO

The crystal structure of 2-methylisoborneol synthase (MIBS) from Streptomyces coelicolor A3(2) has been determined in its unliganded state and in complex with two Mg(2+) ions and 2-fluoroneryl diphosphate at 1.85 and 2.00 Å resolution, respectively. Under normal circumstances, MIBS catalyzes the cyclization of the naturally occurring, noncanonical 11-carbon isoprenoid substrate, 2-methylgeranyl diphosphate, which first undergoes an ionization-isomerization-ionization sequence through the tertiary diphosphate intermediate 2-methyllinalyl diphosphate to enable subsequent cyclization chemistry. MIBS does not exhibit catalytic activity with 2-fluorogeranyl diphosphate, and we recently reported the crystal structure of MIBS complexed with this unreactive substrate analogue [ Köksal, M., Chou, W. K. W., Cane, D. E., Christianson, D. W. (2012) Biochemistry 51 , 3011-3020 ]. However, cocrystallization of MIBS with the fluorinated analogue of the tertiary allylic diphosphate intermediate, 2-fluorolinalyl diphosphate, reveals unexpected reactivity for the intermediate analogue and yields the crystal structure of the complex with the primary allylic diphosphate, 2-fluoroneryl diphosphate. Comparison with the structure of the unliganded enzyme reveals that the crystalline enzyme active site remains partially open, presumably due to the binding of only two Mg(2+) ions. Assays in solution indicate that MIBS catalyzes the generation of (1R)-(+)-camphor from the substrate 2-fluorolinalyl diphosphate, suggesting that both 2-fluorolinalyl diphosphate and 2-methyllinalyl diphosphate follow the identical cyclization mechanism leading to 2-substituted isoborneol products; however, the initially generated 2-fluoroisoborneol cyclization product is unstable and undergoes elimination of hydrogen fluoride to yield (1R)-(+)-camphor.


Assuntos
Proteínas de Bactérias/química , Canfanos/metabolismo , Fosfatos de Poli-Isoprenil/metabolismo , Streptomyces coelicolor/enzimologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Canfanos/química , Domínio Catalítico , Cristalografia por Raios X , Modelos Moleculares , Fosfatos de Poli-Isoprenil/química , Streptomyces coelicolor/química , Streptomyces coelicolor/genética
9.
Biochemistry ; 51(14): 3003-10, 2012 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-22455498

RESUMO

Geranyl diphosphate C-methyltransferase (GPPMT) from Streptomyces coelicolor A3(2) is the first methyltransferase discovered that modifies an acyclic isoprenoid diphosphate, geranyl diphosphate (GPP), to yield a noncanonical acyclic allylic diphosphate product, 2-methylgeranyl diphosphate, which serves as the substrate for a subsequent cyclization reaction catalyzed by a terpenoid cyclase, methylisoborneol synthase. Here, we report the crystal structures of GPPMT in complex with GPP or the substrate analogue geranyl S-thiolodiphosphate (GSPP) along with S-adenosyl-L-homocysteine in the cofactor binding site, resulting from in situ demethylation of S-adenosyl-L-methionine, at 2.05 or 1.82 Å resolution, respectively. These structures suggest that both GPP and GSPP can undergo catalytic methylation in crystalline GPPMT, followed by dissociation of the isoprenoid product. S-Adenosyl-L-homocysteine remains bound in the active site, however, and does not exchange with a fresh molecule of cofactor S-adenosyl-L-methionine. These structures provide important clues about the molecular mechanism of the reaction, especially with regard to the face of the 2,3 double bond of GPP that is methylated as well as the stabilization of the resulting carbocation intermediate through cation-π interactions.


Assuntos
Proteínas de Bactérias/química , Difosfatos/química , Diterpenos/química , Metiltransferases/química , Streptomyces coelicolor/enzimologia , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Cristalografia por Raios X , Difosfatos/metabolismo , Diterpenos/metabolismo , Metilação , Metiltransferases/metabolismo , Conformação Proteica , S-Adenosilmetionina/metabolismo , Streptomyces coelicolor/metabolismo
10.
Biochemistry ; 51(14): 3011-20, 2012 Apr 10.
Artigo em Inglês | MEDLINE | ID: mdl-22455514

RESUMO

The crystal structure of 2-methylisoborneol synthase (MIBS) from Streptomyces coelicolor A3(2) has been determined in complex with substrate analogues geranyl-S-thiolodiphosphate and 2-fluorogeranyl diphosphate at 1.80 and 1.95 Å resolution, respectively. This terpenoid cyclase catalyzes the cyclization of the naturally occurring, noncanonical C-methylated isoprenoid substrate, 2-methylgeranyl diphosphate, to form the bicyclic product 2-methylisoborneol, a volatile C(11) homoterpene alcohol with an earthy, musty odor. While MIBS adopts the tertiary structure of a class I terpenoid cyclase, its dimeric quaternary structure differs from that previously observed in dimeric terpenoid cyclases from plants and fungi. The quaternary structure of MIBS is nonetheless similar in some respects to that of dimeric farnesyl diphosphate synthase, which is not a cyclase. The structures of MIBS complexed with substrate analogues provide insights regarding differences in the catalytic mechanism of MIBS and the mechanisms of (+)-bornyl diphosphate synthase and endo-fenchol synthase, plant cyclases that convert geranyl diphosphate into products with closely related bicyclic bornyl skeletons, but distinct structures and stereochemistries.


Assuntos
Proteínas de Bactérias/química , Canfanos/química , Monoterpenos/química , Streptomyces coelicolor/enzimologia , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Canfanos/metabolismo , Cristalografia por Raios X , Ciclização , Modelos Moleculares , Monoterpenos/metabolismo , Conformação Proteica , Streptomyces coelicolor/metabolismo
11.
Tetrahedron ; 67(35): 6627-6632, 2011 Sep 02.
Artigo em Inglês | MEDLINE | ID: mdl-21804650

RESUMO

The pfl_1841 gene from Pseudomonas fluorescens PfO-1 is the only gene in any of the three sequenced genomes of the Gram-negative bacterium Pseudomonas fluorescens that is annotated as a putative terpene synthase. The predicted Pfl_1841 protein, which harbors the two strictly conserved divalent metal binding domains found in all terpene cyclases, is closely related to several known or presumed 2-methylisoborneol synthases, with the closest match being to the MOL protein of Micromonaspora olivasterospora KY11048 that has been implicated as a 2-methylenebornane synthase. A synthetic gene encoding P. fluorescens Pfl_1841 and optimized for expression in Escherichia coli was expressed and purified as an N-terminal His(6)-tagged protein. Incubation of recombinant Pfl_1841 with 2-methylgeranyl diphosphate produced 2-methylenebornane as the major product accompanied by 1-methyl camphene as well as other minor, monomethyl-homomonoterpene hydrocarbons and alcohols. The steady-state kinetic parameters for the Pfl_1841-catalyzed reaction were K(M) = 110 ± 13 nM and k(cat) = 2.4 ± 0.1 × 10(-2) s(-1). Attempts to identify the P. fluorescens SAM-dependent 2-methylgeranyl diphosphate synthase have so far been unsuccessful.

12.
Chem Biol ; 18(1): 32-7, 2011 Jan 28.
Artigo em Inglês | MEDLINE | ID: mdl-21276937

RESUMO

Two presumptive terpene synthases of unknown biochemical function encoded by the sscg_02150 and sscg_03688 genes of Streptomyces clavuligerus ATCC 27074 were individually expressed in Escherichia coli as N-terminal-His6-tag proteins, using codon-optimized synthetic genes. Incubation of recombinant SSCG_02150 with farnesyl diphosphate (1, FPP) gave (-)-δ-cadinene (2) while recombinant SSCG_03688 converted FPP to (+)-T-muurolol (3). Individual incubations of (-)-δ-cadinene synthase with [1,1-²H2]FPP (1a), (1S)-[1-²H]-FPP (1b), and (1R)-[1-²H]-FPP (1c) and NMR analysis of the resulting samples of deuterated (-)-δ-cadinene supported a cyclization mechanism involving the intermediacy of nerolidyl diphosphate (4) leading to a helminthogermacradienyl cation 5. Following a 1,3-hydride shift of the original H-1(si) of FPP, cyclization and deprotonation will give (-)-δ-cadinene. Similar incubations with recombinant SSCG_03688 supported an analogous mechanism for the formation of (+)-T-muurolol (3), also involving a 1,3-hydride shift of the original H-1(si) of FPP.


Assuntos
Alquil e Aril Transferases/genética , Alquil e Aril Transferases/metabolismo , Genoma Bacteriano/genética , Engenharia de Proteínas/métodos , Sesquiterpenos/metabolismo , Streptomyces/enzimologia , Streptomyces/genética , Alquil e Aril Transferases/biossíntese , Alquil e Aril Transferases/isolamento & purificação , Biocatálise , Ciclização , Escherichia coli/genética , Expressão Gênica , Genômica , Cinética , Sesquiterpenos Policíclicos , Fosfatos de Poli-Isoprenil/metabolismo , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Sesquiterpenos/química , Estereoisomerismo , Terpenos/química , Terpenos/metabolismo
13.
Bioorg Med Chem Lett ; 21(4): 1199-201, 2011 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-21273069

RESUMO

6''-Azido-6''-deoxy-UDP-N-acetylglucosamine (UDP-6Az-GlcNAc) is a potential alternate substrate for N-acetylglucosaminyltransferases. This compound could be used to generate various glycoconjugates bearing an azide functionality that could in turn be subjected to further modification using Staudinger ligation or Huisgen cycloaddition. UDP-6Az-GlcNAc is synthesized from α-benzyl-N-acetylglucosaminoside in seven-steps with an overall yield of 6%. It is demonstrated to serve as a substrate donor for the glycosyl transfer reaction catalyzed by the human UDP-GlcNAc:polypeptidyltransferase (OGT) to the acceptor protein nucleoporin 62 (nup62).


Assuntos
N-Acetilglucosaminiltransferases/química , Uridina Difosfato N-Acetilglicosamina/análogos & derivados , Azidas/síntese química , Azidas/química , Humanos , Glicoproteínas de Membrana/química , Glicoproteínas de Membrana/metabolismo , N-Acetilglucosaminiltransferases/metabolismo , Complexo de Proteínas Formadoras de Poros Nucleares/química , Complexo de Proteínas Formadoras de Poros Nucleares/metabolismo , Especificidade por Substrato , Uridina Difosfato N-Acetilglicosamina/síntese química , Uridina Difosfato N-Acetilglicosamina/química
14.
J Am Chem Soc ; 132(26): 8850-1, 2010 Jul 07.
Artigo em Inglês | MEDLINE | ID: mdl-20536237

RESUMO

The terpene synthase encoded by the sav76 gene of Streptomyces avermtilis was expressed in Escherichia coli as an N-terminal-His(6)-tag protein, using a codon-optimized synthetic gene. Incubation of the recombinant protein, SAV_76, with farnesyl diphosphate (1, FPP) in the presence of Mg(2+) gave a new sesquiterpene alcohol avermitilol (2), whose structure and stereochemistry were determined by a combination of (1)H, (13)C, COSY, HMQC, HMBC, and NOESY NMR, along with minor amounts of germacrene A (3), germacrene B (4), and viridiflorol (5). The absolute configuration of 2 was assigned by (1)H NMR analysis of the corresponding (R)- and (S)-Mosher esters. The steady state kinetic parameters were k(cat) 0.040 +/- 0.001 s(-1) and K(m) 1.06 +/- 0.11 microM. Individual incubations of recombinant avermitilol synthase with [1,1-(2)H(2)]FPP (1a), (1S)-[1-(2)H]-FPP (1b), and (1R)-[1-(2)H]-FPP (1c) and NMR analysis of the resulting avermitilols supported a cyclization mechanism involving the loss of H-1(re) to generate the intermediate bicyclogermacrene (7), which then undergoes proton-initiated anti-Markovnikov cyclization and capture of water to generate 2. A copy of the sav76 gene was reintroduced into S. avermitilis SUKA17, a large deletion mutant from which the genes for the major endogenous secondary metabolites had been removed, and expressed under control of the native S. avermitilis promoter rpsJp (sav4925). The resultant transformants generated avermitilol (2) as well as the derived ketone, avermitilone (8), along with small amounts of 3, 4, and 5. The biochemical function of all four terpene synthases found in the S. avermtilis genome have now been determined.


Assuntos
Alquil e Aril Transferases/genética , Alquil e Aril Transferases/metabolismo , Genoma Bacteriano/genética , Sesquiterpenos/metabolismo , Streptomyces/genética , Alquil e Aril Transferases/química , Sequência de Aminoácidos , Biocatálise , Clonagem Molecular , Ciclização , Fosfatos de Poli-Isoprenil/metabolismo , Streptomyces/enzimologia
15.
J Biol Chem ; 280(43): 35922-8, 2005 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-16120604

RESUMO

Campylobacter jejuni and Campylobacter coli are the main causes of bacterial diarrhea worldwide, and Helicobacter pylori is known to cause duodenal ulcers. In all of these pathogenic organisms, the flagellin proteins are heavily glycosylated with a 2-keto-3-deoxy acid, pseudaminic acid (5,7-diacetamido-3,5,7,9-tetradeoxy-L-glycero-L-manno-nonulosonic acid). The presence of pseudaminic acid is required for the proper development of the flagella and is thereby necessary for motility in, and invasion of, the host. In this study we report the first characterization of NeuB3 from C. jejuni as a pseudaminic acid synthase; the enzyme directly responsible for the biosynthesis of pseudaminic acid. Pseudaminic acid synthase catalyzes the condensation of phosphoenolpyruvate (PEP) with the hexose, 2,4-diacetamido-2,4,6-trideoxy-L-altrose (6-deoxy-AltdiNAc), to form pseudaminic acid and phosphate. The enzymatic activity was monitored using 1H and 31P NMR spectroscopy, and the product was isolated and characterized. Kinetic analysis reveals that pseudaminic acid synthase requires the presence of a divalent metal ion for catalysis and that optimal catalysis occurs at pH 7.0. A coupled enzymatic assay gave the values for k(cat) of 0.65 +/- 0.01 s(-1), K(m)PEP of 6.5 +/- 0.4 microM, and K(m)6-deoxy-AltdiNAc of 9.5 +/- 0.7 microM. A mechanistic study on pseudaminic acid synthase, using [2-18O]PEP, shows that catalysis proceeds through a C-O bond cleavage mechanism similar to other PEP condensing synthases such as sialic acid synthase.


Assuntos
Campylobacter jejuni/metabolismo , N-Acilneuraminato Citidililtransferase/química , Campylobacter coli/metabolismo , Catálise , Clonagem Molecular , Cobalto/química , Relação Dose-Resposta a Droga , Eletroforese em Gel de Poliacrilamida , Concentração de Íons de Hidrogênio , Cinética , Espectroscopia de Ressonância Magnética , Modelos Químicos , N-Acilneuraminato Citidililtransferase/fisiologia , Oxo-Ácido-Liases/química , Fosfatos/química , Fosfoenolpiruvato/química
16.
Biochemistry ; 43(44): 14290-8, 2004 Nov 09.
Artigo em Inglês | MEDLINE | ID: mdl-15518580

RESUMO

This paper reports the first identification of a fully functional hydrolyzing UDP-N-acetylglucosamine 2-epimerase from a bacterial source. The epimerase (known as SiaA or NeuC) from Neisseria meningitidis MC58 group B is shown to catalyze the conversion of UDP-GlcNAc into ManNAc and UDP in the first step of sialic acid (N-acetylneuraminic acid) biosynthesis. The mechanism is proposed to involve an anti elimination of UDP to form 2-acetamidoglucal as an intermediate, followed by the syn addition of water. The observation that the alpha-anomer of ManNAc is the true product and that solvent deuterium is incorporated at C-2 is consistent with this mechanism. The use of the (18)O-labeled substrate confirms that the overall hydrolysis reaction proceeds via cleavage of the C-O bond. Furthermore, the putative intermediate 2-acetamidoglucal is shown to serve as a catalytically competent substrate and is enzymatically hydrated to give ManNAc exclusively. Isotope effect studies show that cleavage of the C-H bond is not rate limiting during catalysis. Mutagenesis studies show that three active site carboxylate residues are crucial for catalysis. In two of the mutants that were studied (E122Q and D131N), 2-acetamidoglucal was released from the active site during catalysis, providing direct evidence that the enzyme is capable of catalyzing the anti elimination of UDP from UDP-GlcNAc.


Assuntos
Proteínas de Bactérias/química , Carboidratos Epimerases/química , Neisseria meningitidis/enzimologia , Racemases e Epimerases/química , Animais , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Sítios de Ligação/genética , Carboidratos Epimerases/biossíntese , Carboidratos Epimerases/genética , Carboidratos Epimerases/isolamento & purificação , Catálise , Clonagem Molecular , Medição da Troca de Deutério , Regulação Bacteriana da Expressão Gênica , Hexosaminas/química , Hidrólise , Cinética , Mutagênese Sítio-Dirigida , Neisseria meningitidis/genética , Ressonância Magnética Nuclear Biomolecular , Coelhos , Racemases e Epimerases/biossíntese , Racemases e Epimerases/genética , Racemases e Epimerases/isolamento & purificação , Solventes , Estereoisomerismo , Especificidade por Substrato
17.
J Am Chem Soc ; 125(9): 2455-61, 2003 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-12603133

RESUMO

The bifunctional enzyme, UDP-N-acetylglucosamine 2-epimerase/ManNAc kinase, catalyzes the first two steps in the biosynthesis of the sialic acids in mammals. The epimerase domain converts UDP-GlcNAc into ManNAc and UDP. This paper demonstrates that alpha-ManNAc is the first formed anomer and therefore the reaction proceeds with a net retention of configuration at C-1. Studies in deuterated buffer show that solvent-derived deuterium is quantitatively incorporated into the C-2 position of the product during catalysis, but it is not incorporated into the remaining pool of substrate. This indicates that the inversion of stereochemistry is ultimately brought about by the removal and replacement of a proton at C-2 and is consistent with a two-base mechanism. Studies with (18)O-labeled UDP-GlcNAc show that the anomeric oxygen of the glycosyl phosphate bond departs with the UDP product and therefore the net hydrolysis reaction involves C-O bond cleavage. Incubation of the putative intermediate, 2-acetamidoglucal, with the enzyme resulted in a slow hydration reaction to give the product, ManNAc. Additional kinetic isotope effect and positional isotope exchange (PIX) experiments address the nature of the rate-determining step of the reaction and show that C-H bond cleavage is not rate limiting. Overall, these results support a reaction mechanism involving an anti-elimination of UDP to give 2-acetamidoglucal, followed by a syn-addition of water.


Assuntos
Carboidratos Epimerases/metabolismo , Ácidos Siálicos/biossíntese , Animais , Baculoviridae/genética , Carboidratos Epimerases/genética , Carboidratos Epimerases/isolamento & purificação , Catálise , Deutério , Cinética , Ressonância Magnética Nuclear Biomolecular , Ratos , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Spodoptera/enzimologia , Spodoptera/virologia , Estereoisomerismo
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